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Plot gene stats for chromosomes

Source: R/plot_gene_stats.R
plot_gene_stats.Rd

Plot gene stats for chromosomes.

Usage

plot_gene_stats(
  gff_file,
  format = "auto",
  bar_width = 0.7,
  bar_color = "#0055ff55",
  lable_size = 3
)

Arguments

gff_file

Path to GFF3/GTF file as input.

format

Format of GFF3/GTF file. ("auto", "gff3", "gtf").

bar_width

Bar width percent. (0.7).

bar_color

Bar color with name or hex code. ("#0055ff55").

lable_size

Lable text size. (3).

Value

A plot object of gene stats for chromosomes.

Author

benben-miao

Examples

# Example GFF3 file in GAnnoViz
gff_file <- system.file(
    "extdata",
    "example.gff3.gz",
    package = "GAnnoViz")

# Plot gene stats
plot_gene_stats(
    gff_file = gff_file,
    format = "auto",
    bar_width = 0.7,
    bar_color = "#0055ff55",
    lable_size = 3)
#> Import genomic features from the file as a GRanges object ... 
#> OK
#> Prepare the 'metadata' data frame ... 
#> OK
#> Make the TxDb object ... 
#> OK