Flower plot for stat common and unique gene among multiple sets.

Usage

flower_plot(
  flower_dat,
  angle = 90,
  a = 1,
  b = 2,
  r = 1,
  ellipse_col_pal = "Spectral",
  circle_col = "white",
  label_text_cex = 1
)

Arguments

flower_dat: Dataframe: Paired comparisons differentially expressed genes (degs) among groups (1st-col~: degs of paired comparisons).
angle: Number: set the angle of rotation in degress. Default: 90.
a: Number: set the radii of the ellipses along the x-axes. Default: 0.5.
b: Number: set the radii of the ellipses along the y-axes. Default: 2.
r: Number: set the radius of the circle. Default: 1.
ellipse_col_pal: Character: set the color palette for filling the ellipse. Default: "Spectral", options: 'Spectral', 'Set1', 'Set2', 'Set3', 'Accent', 'Dark2', 'Paired', 'Pastel1', 'Pastel2'.
circle_col: Character: set the color for filling the circle. Default: "white".
label_text_cex: Number: set the label text cex. Default: 1.

Value

Plot: Flower plot for stat common and unique gene among multiple sets.

Author

wei dong

Examples

# 1. Library TOmicsVis package
library(TOmicsVis)

# 2. Use example dataset
data(degs_lists)
head(degs_lists)
#>        CT.vs.LT20      CT.vs.LT15       CT.vs.LT12     CT.vs.LT12_6
#> 1 transcript_9024 transcript_4738  transcript_9956 transcript_10354
#> 2  transcript_604 transcript_6050  transcript_7601  transcript_2959
#> 3 transcript_3912 transcript_1039  transcript_5960  transcript_5919
#> 4 transcript_8676 transcript_1344  transcript_3240  transcript_2395
#> 5 transcript_8832 transcript_3069 transcript_10224  transcript_9881
#> 6   transcript_74 transcript_9809  transcript_3151  transcript_8836

# 3. Default parameters
flower_plot(degs_lists)


# 4. Set angle = 60
flower_plot(degs_lists, angle = 60)


# 5. Set ellipse_col_pal = "Accent"
flower_plot(degs_lists, ellipse_col_pal = "Accent")


# 6. Set a = 1, b = 2, r = 1
flower_plot(degs_lists, a = 1, b = 2, r = 1, ellipse_col_pal = "Set2")