Shared DEGs of all paired comparisons in all groups expression dataframe of RNA-Seq.
Source:R/gene_expression3.R
gene_expression3.RdShared DEGs of all paired comparisons in all groups expression dataframe of RNA-Seq.
Usage
data(gene_expression3)Format
Dataframe: Shared DEGs of all paired comparisons in all groups expression dataframe of RNA-Seq. (1st-col: Genes, 2nd-col~n-1-col: Groups, n-col: Pathways).
Examples
# 1. Library TOmicsVis package
library(TOmicsVis)
# 2. Load example dataset
data(gene_expression3)
# 3. View gene_expression3
gene_expression3
#> Genes CT LT20 LT15 LT12 LT12_6
#> 1 ACAA2 3.990333e+01 1.234367e+02 272.3533333 3.592833e+02 4.649400e+02
#> 2 ACAN 1.466000e+01 1.424800e+02 226.0333333 3.164367e+02 1.083523e+03
#> 3 ADH1 1.713333e+00 1.480667e+01 12.2000000 1.754333e+01 9.343333e+00
#> 4 AHSG 6.373300e+02 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 5 ALDH2 2.490000e+00 6.033333e-01 0.2700000 1.300000e-01 2.100000e-01
#> 6 AP1S3 1.017000e+01 2.734333e+01 29.1600000 3.244667e+01 4.427667e+01
#> 7 APOA1 4.957333e+01 1.058000e+02 161.7600000 1.265967e+02 2.689167e+02
#> 8 APOB 1.190667e+01 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 9 APOC2 4.203333e+00 1.809930e+03 1602.0733330 2.917087e+03 1.134323e+03
#> 10 APOEB 9.166667e-01 1.008333e+01 7.0033333 1.503667e+01 1.298667e+01
#> 11 ARHGEF28 2.602333e+01 1.212667e+01 5.6900000 6.180000e+00 2.353333e+00
#> 12 ARRDC2 2.953000e+01 6.870000e+00 4.2666667 3.913333e+00 2.893333e+00
#> 13 BLVRB 1.452667e+01 5.163333e+00 4.8266667 4.633333e+00 2.666667e+00
#> 14 BTG3 1.220000e+01 3.215333e+01 53.9066667 1.795933e+02 2.386733e+02
#> 15 C3 4.051333e+01 8.774333e+01 110.6766667 1.270600e+02 2.142867e+02
#> 16 C5 0.000000e+00 8.541667e+01 107.7166667 7.454333e+01 5.283000e+01
#> 17 C7 2.260000e+00 9.043333e+00 58.3566667 1.550667e+01 2.230433e+02
#> 18 C9 3.750000e+00 1.213333e+01 8.9966667 1.458000e+01 8.606667e+00
#> 19 CCNG2 1.867667e+01 8.766667e+00 8.1366667 5.973333e+00 2.926667e+00
#> 20 CDO1 4.068333e+01 1.826833e+02 351.6566667 3.017700e+02 7.549033e+02
#> 21 CERS2 7.543333e+00 2.014000e+01 23.3666667 2.871000e+01 3.794667e+01
#> 22 CFB 0.000000e+00 4.345667e+01 12.6066667 1.027000e+01 9.403333e+00
#> 23 CFH 0.000000e+00 4.563333e+00 8.8133333 1.313000e+01 1.704333e+01
#> 24 CISH 1.926667e+01 5.866667e+00 6.3700000 4.403333e+00 1.556667e+00
#> 25 CLEC4E 3.830667e+01 9.410333e+01 113.1633333 1.080967e+02 1.601433e+02
#> 26 CLEC4M 3.164000e+01 7.026333e+01 87.3566667 8.033333e+01 1.336367e+02
#> 27 CP 0.000000e+00 2.239000e+01 42.1200000 3.198667e+01 2.823667e+01
#> 28 CYC 1.526667e+00 6.003333e+00 27.6866667 5.135333e+01 2.103967e+02
#> 29 CYP24A1 3.433333e-01 5.420000e+00 120.1133333 3.086700e+02 9.070333e+01
#> 30 CYP2J2 0.000000e+00 4.140333e+01 119.1633333 6.259333e+01 3.062667e+01
#> 31 CYP2K1 3.153333e+00 0.000000e+00 0.0000000 3.333333e-03 0.000000e+00
#> 32 DECR2 1.627333e+01 6.670000e+00 6.3933333 5.010000e+00 4.363333e+00
#> 33 DHCR24 1.151333e+01 3.286000e+01 33.1666667 3.421333e+01 2.952333e+01
#> 34 DHCR7 5.760000e+00 1.647333e+01 18.8766667 1.398000e+01 1.439333e+01
#> 35 DIO3 4.361333e+01 1.352733e+02 133.3800000 2.419333e+02 3.288433e+02
#> 36 DLC1 3.236667e+00 9.253333e+00 9.9533333 1.365667e+01 1.680333e+01
#> 37 EEF2 3.000000e-02 3.536233e+02 35.8133333 2.455267e+02 2.089833e+02
#> 38 EIF4E 2.216667e+00 9.823333e+00 28.4866667 3.652000e+01 1.614600e+02
#> 39 ELL 5.623333e+00 1.611000e+01 21.1500000 2.746667e+01 2.388667e+01
#> 40 ERRFI1 5.180000e+00 5.612333e+01 85.2466667 1.030700e+02 1.291000e+02
#> 41 F2 6.330000e+00 3.377333e+01 85.9733333 7.647667e+01 9.612000e+01
#> 42 FAAH 1.200067e+02 1.665000e+01 5.7233333 7.083333e+00 3.070000e+00
#> 43 FBP1 6.654667e+01 1.488333e+02 253.4766667 2.545800e+02 4.753267e+02
#> 44 FBP2 7.393333e+00 1.644667e+01 37.8900000 4.574667e+01 1.244800e+02
#> 45 FDPS 9.096667e+00 2.155000e+01 24.6833333 2.606000e+01 1.805333e+01
#> 46 FETUB 0.000000e+00 8.113333e+00 4.3500000 2.265000e+01 1.521667e+01
#> 47 FGA 2.333333e-02 1.026100e+02 68.5833333 2.953333e+01 3.329333e+01
#> 48 FGB 9.733333e-01 1.228333e+01 18.4433333 4.354667e+01 4.970000e+01
#> 49 FHL1 7.320000e+00 3.410000e+00 2.4466667 2.856667e+00 1.953333e+00
#> 50 FKBP5 2.600000e-01 3.873333e+00 6.7433333 8.780000e+00 1.735000e+01
#> 51 FN1 7.500000e+00 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 52 FOSL2 4.700000e-01 2.336667e+00 6.9333333 5.344000e+01 2.150633e+02
#> 53 GPD1 6.761333e+01 1.976267e+02 225.5300000 2.396900e+02 1.383833e+02
#> 54 GRINA 9.146667e+00 2.759000e+01 34.6400000 3.969667e+01 3.518333e+01
#> 55 HAMP 3.459333e+01 2.940033e+02 259.5933333 8.544833e+02 3.670600e+02
#> 56 HEPH 4.666667e-02 7.816667e+01 199.2533333 1.587333e+02 5.314000e+01
#> 57 HIGD1A 2.923333e+00 1.084667e+01 15.8400000 3.858000e+01 1.708033e+02
#> 58 HLF 1.540000e+00 5.933333e+00 7.1333333 7.926667e+00 3.703333e+00
#> 59 HMGCR 1.721667e+01 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 60 HMGCS1 3.083333e+00 1.604000e+01 14.3500000 1.459667e+01 1.418667e+01
#> 61 HMOX 1.991100e+02 8.492667e+01 62.0300000 5.946333e+01 2.989667e+01
#> 62 HPX 0.000000e+00 3.217050e+03 7689.9733330 4.359253e+03 2.452460e+03
#> 63 HS3ST3B1 5.536667e+00 1.311000e+01 12.4566667 1.306333e+01 4.148667e+01
#> 64 HSD17B7 1.443333e+00 5.323333e+00 5.8700000 7.596667e+00 5.740000e+00
#> 65 HSP30 1.283333e+00 3.666667e-02 0.0000000 0.000000e+00 0.000000e+00
#> 66 IDI1 5.606667e+00 1.845333e+01 15.5133333 1.526667e+01 1.263333e+01
#> 67 IDO2 3.082667e+01 1.294000e+01 12.9566667 9.090000e+00 7.886667e+00
#> 68 IL1R1 1.765667e+01 3.945333e+01 76.0100000 6.639667e+01 8.238667e+01
#> 69 IL6R 1.513667e+01 3.547333e+01 42.8200000 6.374333e+01 9.317333e+01
#> 70 INSIG1 1.663333e+00 4.726667e+00 11.8066667 2.555333e+01 1.421000e+02
#> 71 ITIH3 1.773333e+01 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 72 KLF12 2.383333e+00 8.160000e+00 10.7733333 1.068333e+01 1.653667e+01
#> 73 KRT18 5.518333e+01 5.666667e-02 0.0000000 1.333333e-02 2.666667e-02
#> 74 L2HGDH 8.000000e-01 2.178333e+01 57.4566667 5.222333e+01 5.741000e+01
#> 75 LECT2 8.176667e+00 2.443333e+01 27.0066667 6.048333e+01 7.552000e+01
#> 76 LRR1 4.073333e+00 1.256667e+00 0.7000000 1.020000e+00 3.300000e-01
#> 77 MAPK6 8.380000e+00 3.573333e+01 76.6933333 1.163033e+02 1.661600e+02
#> 78 MDH 6.616000e+01 1.887200e+02 283.3433333 2.673833e+02 3.673400e+02
#> 79 MID1IP1L 1.909000e+01 4.890000e+00 2.2366667 2.343333e+00 1.860000e+00
#> 80 MKNK2 6.093333e+00 1.235667e+01 23.9800000 3.382667e+01 4.504000e+01
#> 81 MT-ATP6 2.718863e+03 1.140000e+00 0.0000000 8.633333e-01 2.200000e+00
#> 82 MT-CO1 6.518067e+02 2.390333e+01 19.3933333 2.637000e+01 3.173000e+01
#> 83 MT-ND2 6.851533e+02 3.200000e-01 0.2533333 1.033333e-01 4.000000e-02
#> 84 MT-ND4 5.888367e+02 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 85 MT-ND6 3.056333e+01 0.000000e+00 0.0000000 0.000000e+00 0.000000e+00
#> 86 NFIL3 1.169000e+01 2.749333e+01 30.9066667 6.079333e+01 5.792000e+01
#> 87 NOCT 4.153333e+00 1.972000e+01 23.4700000 5.542333e+01 5.076333e+01
#> 88 NQO1 2.864667e+01 1.249333e+01 13.7133333 1.344000e+01 9.870000e+00
#> 89 NUDT7 1.756667e+00 7.466667e-01 0.5300000 3.000000e-01 1.000000e-01
#> 90 P33MONOX 1.109667e+01 1.563333e+00 2.1633333 2.180000e+00 3.383333e+00
#> 91 PAIP2B 6.963333e+00 2.086667e+01 29.3500000 2.345333e+01 1.577667e+01
#> 92 PDIA3 9.583333e+00 2.512000e+01 19.7433333 2.295333e+01 4.403667e+01
#> 93 PDK2 5.918333e+01 1.528167e+02 124.2533333 1.802400e+02 1.472800e+02
#> 94 PDLIM2 1.085000e+01 4.200000e+00 3.1966667 2.483333e+00 5.700000e-01
#> 95 PIM3 4.753333e+00 1.441667e+01 36.9266667 7.831000e+01 8.694667e+01
#> 96 PLIN2 1.754000e+01 6.443000e+01 114.3400000 2.812067e+02 3.339400e+02
#> 97 PNP 7.322333e+01 3.324467e+02 881.4700000 1.394310e+03 1.597117e+03
#> 98 PPARA 2.170000e+00 1.288333e+01 17.8166667 2.622333e+01 1.314867e+02
#> 99 PPDPFA 1.083967e+02 2.487467e+02 387.0666667 3.986433e+02 2.438900e+02
#> 100 PPM1K 1.283333e+00 9.053333e+00 12.0200000 9.706667e+00 1.798333e+01
#> 101 PPP1CC-A 1.563333e+00 7.220000e+00 15.2600000 2.397333e+01 9.563333e+00
#> 102 PPP1R3B 3.904667e+01 1.653433e+02 221.6600000 3.285567e+02 1.404367e+02
#> 103 PPTC7 4.566667e-01 8.403333e+00 8.6800000 3.640000e+00 1.416667e+00
#> 104 PRELID3B 2.773333e+00 2.391333e+01 57.1700000 1.294000e+02 2.920267e+02
#> 105 PRODH 1.733333e-01 2.240000e+00 20.3933333 3.121667e+01 2.995167e+02
#> 106 PSPH 2.186667e+00 4.426667e+00 10.0933333 9.340000e+00 2.203333e+01
#> 107 RASD2 2.800000e-01 5.140000e+00 3.8000000 1.191333e+01 1.950333e+01
#> 108 RBMX 1.384333e+01 6.116667e+00 3.8933333 3.146667e+00 3.310000e+00
#> 109 RBP4A 2.902333e+02 1.231233e+02 96.4600000 1.098633e+02 3.456333e+01
#> 110 RHBG-A 2.213333e+01 8.630000e+00 3.7033333 4.736667e+00 1.863333e+00
#> 111 RHOAD 3.616667e+00 9.700000e+00 8.9833333 7.886667e+00 8.776667e+00
#> 112 RND3 8.746667e+00 2.095333e+01 28.2900000 3.600000e+01 5.347667e+01
#> 113 RNF223 1.900000e-01 2.953333e+00 2.1033333 2.233333e+00 4.996667e+00
#> 114 RRBP1 1.441667e+01 2.974667e+01 41.7333333 3.487667e+01 6.048333e+01
#> 115 RXRGB 3.623667e+01 1.136333e+01 13.1933333 1.239333e+01 6.796667e+00
#> 116 SAT1 1.087333e+01 2.813667e+01 67.0366667 1.804133e+02 2.885800e+02
#> 117 SERPINA3-3 0.000000e+00 1.429667e+01 55.0900000 1.235400e+02 7.930000e+00
#> 118 SERPINA3-8 3.450667e+01 6.908667e+01 110.0633333 1.765733e+02 3.544933e+02
#> 119 SERPING1 0.000000e+00 2.666667e+01 61.7333333 3.017333e+01 5.588000e+01
#> 120 SFPQ 1.734333e+01 3.323667e+01 52.9933333 6.145000e+01 8.585333e+01
#> 121 SLC16A1 4.700000e-01 1.210333e+01 23.8233333 3.028333e+01 8.282000e+01
#> 122 SLC20A1B 6.540000e+00 1.882333e+01 35.7666667 5.276333e+01 2.136067e+02
#> 123 SLC22A2 2.548000e+01 7.450000e+00 5.4633333 5.120000e+00 4.363333e+00
#> 124 SLC25A25A 9.500000e-01 2.232000e+01 64.2633333 1.125200e+02 1.148300e+02
#> 125 SLC2A12 1.145000e+01 5.053333e+00 4.2700000 3.610000e+00 7.300000e-01
#> 126 SLC3A2 3.533333e+00 7.610000e+00 13.1033333 1.872667e+01 6.079333e+01
#> 127 SOAT1 1.577000e+01 6.882667e+01 129.1366667 8.004333e+01 4.728000e+01
#> 128 SOCS3 1.663333e+00 4.130000e+00 4.5833333 1.426333e+01 1.410000e+01
#> 129 SSR1 0.000000e+00 1.529333e+01 22.6800000 1.376000e+01 1.796667e+01
#> 130 TAT 5.766667e-01 6.603333e+00 9.8166667 1.084000e+01 7.493333e+00
#> 131 TCF21 6.530000e+00 2.966667e+00 1.8533333 1.273333e+00 1.393333e+00
#> 132 TF 0.000000e+00 1.085793e+03 954.0600000 2.406800e+03 5.783067e+02
#> 133 TOR3A 1.106667e+00 8.290000e+00 7.3400000 1.264333e+01 3.005333e+01
#> 134 UGT3 1.873333e+00 6.533333e+00 13.6433333 6.513333e+00 1.601000e+01
#> 135 UPP2 3.858333e+01 1.067800e+02 146.2866667 1.365233e+02 1.321167e+02
#> 136 UROS 7.863333e+00 2.613333e+00 1.6300000 7.866667e-01 6.200000e-01
#> 137 XBP1 6.284333e+01 1.555433e+02 164.5566667 1.905633e+02 2.309567e+02
#> 138 YME1L1 9.370000e+00 1.831000e+01 29.1133333 3.102000e+01 5.596000e+01
#> 139 YPEL3 2.465333e+01 6.273333e+00 4.9033333 4.913333e+00 1.080000e+00
#> Pathways
#> 1 PPAR signaling pathway
#> 2 PPAR signaling pathway
#> 3 PPAR signaling pathway
#> 4 PPAR signaling pathway
#> 5 PPAR signaling pathway
#> 6 PPAR signaling pathway
#> 7 PPAR signaling pathway
#> 8 PPAR signaling pathway
#> 9 PPAR signaling pathway
#> 10 PPAR signaling pathway
#> 11 PPAR signaling pathway
#> 12 PPAR signaling pathway
#> 13 PPAR signaling pathway
#> 14 PPAR signaling pathway
#> 15 PPAR signaling pathway
#> 16 PPAR signaling pathway
#> 17 PPAR signaling pathway
#> 18 PPAR signaling pathway
#> 19 PPAR signaling pathway
#> 20 PPAR signaling pathway
#> 21 PPAR signaling pathway
#> 22 PPAR signaling pathway
#> 23 PPAR signaling pathway
#> 24 PPAR signaling pathway
#> 25 PPAR signaling pathway
#> 26 PPAR signaling pathway
#> 27 PPAR signaling pathway
#> 28 PPAR signaling pathway
#> 29 PPAR signaling pathway
#> 30 PPAR signaling pathway
#> 31 PPAR signaling pathway
#> 32 PPAR signaling pathway
#> 33 PPAR signaling pathway
#> 34 PPAR signaling pathway
#> 35 PPAR signaling pathway
#> 36 PPAR signaling pathway
#> 37 PPAR signaling pathway
#> 38 PPAR signaling pathway
#> 39 PPAR signaling pathway
#> 40 PPAR signaling pathway
#> 41 PPAR signaling pathway
#> 42 PPAR signaling pathway
#> 43 PPAR signaling pathway
#> 44 PPAR signaling pathway
#> 45 PPAR signaling pathway
#> 46 PPAR signaling pathway
#> 47 PPAR signaling pathway
#> 48 PPAR signaling pathway
#> 49 PPAR signaling pathway
#> 50 PPAR signaling pathway
#> 51 AMPK pathway
#> 52 AMPK pathway
#> 53 AMPK pathway
#> 54 AMPK pathway
#> 55 AMPK pathway
#> 56 AMPK pathway
#> 57 AMPK pathway
#> 58 AMPK pathway
#> 59 AMPK pathway
#> 60 AMPK pathway
#> 61 AMPK pathway
#> 62 AMPK pathway
#> 63 AMPK pathway
#> 64 AMPK pathway
#> 65 AMPK pathway
#> 66 AMPK pathway
#> 67 AMPK pathway
#> 68 AMPK pathway
#> 69 AMPK pathway
#> 70 AMPK pathway
#> 71 AMPK pathway
#> 72 AMPK pathway
#> 73 AMPK pathway
#> 74 AMPK pathway
#> 75 AMPK pathway
#> 76 AMPK pathway
#> 77 AMPK pathway
#> 78 AMPK pathway
#> 79 AMPK pathway
#> 80 AMPK pathway
#> 81 AMPK pathway
#> 82 AMPK pathway
#> 83 AMPK pathway
#> 84 AMPK pathway
#> 85 AMPK pathway
#> 86 AMPK pathway
#> 87 AMPK pathway
#> 88 AMPK pathway
#> 89 AMPK pathway
#> 90 AMPK pathway
#> 91 AMPK pathway
#> 92 AMPK pathway
#> 93 AMPK pathway
#> 94 AMPK pathway
#> 95 AMPK pathway
#> 96 AMPK pathway
#> 97 AMPK pathway
#> 98 AMPK pathway
#> 99 AMPK pathway
#> 100 AMPK pathway
#> 101 Autophagy pathway
#> 102 Autophagy pathway
#> 103 Autophagy pathway
#> 104 Autophagy pathway
#> 105 Autophagy pathway
#> 106 Autophagy pathway
#> 107 Autophagy pathway
#> 108 Autophagy pathway
#> 109 Autophagy pathway
#> 110 Autophagy pathway
#> 111 Autophagy pathway
#> 112 Autophagy pathway
#> 113 Autophagy pathway
#> 114 Autophagy pathway
#> 115 Autophagy pathway
#> 116 Autophagy pathway
#> 117 Autophagy pathway
#> 118 Autophagy pathway
#> 119 Autophagy pathway
#> 120 Autophagy pathway
#> 121 Autophagy pathway
#> 122 Autophagy pathway
#> 123 Autophagy pathway
#> 124 Autophagy pathway
#> 125 Autophagy pathway
#> 126 Autophagy pathway
#> 127 Autophagy pathway
#> 128 Autophagy pathway
#> 129 Autophagy pathway
#> 130 Autophagy pathway
#> 131 Autophagy pathway
#> 132 Autophagy pathway
#> 133 Autophagy pathway
#> 134 Autophagy pathway
#> 135 Autophagy pathway
#> 136 Autophagy pathway
#> 137 Autophagy pathway
#> 138 Autophagy pathway
#> 139 Autophagy pathway