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Venn plot for stat common and unique gene among multiple sets.

Source: R/venn_plot.R
venn_plot.Rd

Venn plot for stat common and unique gene among multiple sets.

Usage

venn_plot(
  data,
  title_size = 1,
  label_show = TRUE,
  label_size = 0.8,
  border_show = TRUE,
  line_type = "longdash",
  ellipse_shape = "circle",
  sci_fill_color = "Sci_AAAS",
  sci_fill_alpha = 0.65
)

Arguments

data

Dataframe: Paired comparisons differentially expressed genes (degs) among groups (1st-col~: degs of paired comparisons).

title_size

Numeric: sets title size. Default: 1, min: 0, max: NULL.

label_show

Logical: show intersection labels. Default: TRUE, options: TRUE, FALSE.

label_size

Numeric: intersection labels size. Default: 0.8, min: 0, max: NULL.

border_show

Logical: show border line. Default: TRUE, options: TRUE, FALSE.

line_type

Character: ellipse border line type. Default: "blank", options: "blank", "solid", "dashed", "dotted", "dotdash", "longdash", "twodash".

ellipse_shape

Character: ellipse shape. Default: "circle", options: "circle", "ellipse".

sci_fill_color

Character: ggsci color palette. Default: "Sci_AAAS", options: "Sci_AAAS", "Sci_NPG", "Sci_Simpsons", "Sci_JAMA", "Sci_GSEA", "Sci_Lancet", "Sci_Futurama", "Sci_JCO", "Sci_NEJM", "Sci_IGV", "Sci_UCSC", "Sci_D3", "Sci_Material".

sci_fill_alpha

Numeric: ggsci fill color alpha. Default: 0.65, min: 0.00, max: 1.00.

Value

Plot: venn plot for stat common and unique gene among multiple sets.

Author

benben-miao

Examples

# 1. Library TOmicsVis package
library(TOmicsVis)

# 2. Use example dataset
data(degs_lists)
head(degs_lists)
#>        CT.vs.LT20      CT.vs.LT15       CT.vs.LT12     CT.vs.LT12_6
#> 1 transcript_9024 transcript_4738  transcript_9956 transcript_10354
#> 2  transcript_604 transcript_6050  transcript_7601  transcript_2959
#> 3 transcript_3912 transcript_1039  transcript_5960  transcript_5919
#> 4 transcript_8676 transcript_1344  transcript_3240  transcript_2395
#> 5 transcript_8832 transcript_3069 transcript_10224  transcript_9881
#> 6   transcript_74 transcript_9809  transcript_3151  transcript_8836

# 3. Default parameters
venn_plot(degs_lists)


# 4. Set line_type = "blank"
venn_plot(degs_lists, line_type = "blank")


# 5. Set ellipse_shape = "ellipse"
venn_plot(degs_lists, ellipse_shape = "ellipse")


# 6. Set sci_fill_color = "Sci_IGV"
venn_plot(degs_lists, sci_fill_color = "Sci_IGV")