Page 21 - Omics

Analysis Process

Raw File

Proteome Xchange: MaxQuant(offline)/
http://www.proteomexch Protein DB Search SEQUEST /
ange.org/ MASCOT(offline/online)

Vocano Graph：
ggplot2(R) Different expression Proteins

GO Graph:
GO Anotation
barplot/dotplot/ggplot2(R)

KEGG Graph:
KEGG Anotaion barplot/dotplot/ggplot2(R)

Protein
Function Annotation COG Anotation

SMART:
Protein structure domains https://smart.embl-
predictor heidelberg.de/

Interaction Network STRING:
Proteom analysis https://string-db.org/
With transcriptom