Page 16 - Omics

Analysis Process Metagenomic
RAW Reads Sequencing

Quality Control FastQC

Clean Reads Cutadapt

Annotation
Kraken2
classification

Sorting and
qiime taxa barplot
visualization

Hatmap Pheatmap(R)
KEGG

LEfSe LEfSe
GO
Qiime2(Analysis of composition of
Statistical analysis ANCOM microbiomes)
MetaCyc

EggNOG Functional Analysis PCoA

NMDS Vegan(R)
CAZy ggplot2

RDA/CCA
Enzyme

CARD