Page 17 - Omics

Software/
Database

FastQC (Quality Control) :

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Cutadapt (Remove adapt at reads) :

https://cutadapt.readthedocs.io/en/stable/

Qiime2 (microbiome bioinformatics platform) : https://qiime2.org/

LEfSe (Difference analysis) :

https://bitbucket.org/biobakery/biobakery/wiki/lefse

Vegan (Statistics) :

https://www.rdocumentation.org/packages/vegan/versions/2.4-2

Pheatmap (Heatmap) :

https://www.rdocumentation.org/packages/pheatmap/versions/1.0.12/topics/pheatmap

KEGG (Kyoto Encyclopedia of Genes and Genomes): https://www.kegg.jp/

GO (Gene Ontology) : http://geneontology.org/

MetaCyc (Database of metabolic pathways): https://metacyc.org/

EggNOG (Clusters of Orthologous Groups of proteins) : http://eggnogdb.embl.de/

CAZy (Enzyme) : http://www.cazy.org/

ENZYME (Enzyme) : https://enzyme.expasy.org/