Page 11 - Omics
P. 11
Raw Reads
Analysis Process
FastQC /
Quality Control MultiQC(Python)
Trimmomatic Clean Reads Ref Seq
Hisat2 /
Bowtie2 Mapped Reads
Transcript
Vocano Graph: DESeq2(R) /
ggplot2(R) edger(R) Gene expression New gene identification
GATK4
Sample relationship
analysis Genetic structure
optimization
Differential gene
analysis Mutation analysis
RNA Edit
StringDB PPI analysis Enrichment analysis clusterProfiler(R)
STARfusion
Fusion gene analysis
GO KEGG Reactome
rMATS
Variable shear analysis
