Page 15 - Omics

Analysis Process 16S、18S、ITS
RAW Reads
Sequences

Quality Control FastQC

Cut Adapte Cutadapt

Cutting, DE chimerism,
splicing qiime dada2 denoise-paired Qiime2

Taxonomy Annotation qiime feature-classifier Qiime2
classify-sklearn

Alpha Diversity
Calculation and visualization Vegan/Boxplot(R)

Beta Diversity
Calculation and visualization Vegan/Dotplot(R)

Find differential bacteria LEfSe:
between groups https://bitbucket.org/biobakery/biobakery/wiki/lefse